snp marker features  (Neogen)

Journal: TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik

Article Title: Identification and validation of qPC-3A , a stable QTL for flour protein content in hard wheat ( Triticum aestivum L.)

doi: 10.1007/s00122-026-05215-8

Figure Lengend Snippet: Comparison of protein contents based on qPC-3A in a–d Jokyoung × Joongmo2008 recombinant inbred lines and e–f Joongmo2008-derived breeding lines. a–b Significant difference between protein contents based on two SNP markers associated with qPC3A : a Ax-94777654 and b Ax-94603874. c–d Effect of c Glu-A1 and d Glu-B1 in relation to qPC-3A . e–f Impact of qPC-3A on protein content in Joongmo2008-derived breeding lines, analyzed using e relative protein change and f Z-score normalization models. * P < 0.05, ** P < 0.01, *** P < 0.001, ns: not significant

Article Snippet: The Ax-94603874 single nucleotide polymorphism (SNP) marker, identified from the 35 K chip, was adapted into a KASP marker using the reference sequences and SNP data retrieved from the National Center for Biotechnology Information (NCBI) for the genotyping of qPC-3A .

Techniques: Comparison, Recombinant, Derivative Assay

Journal: BMC Plant Biology

Article Title: Mapped deletions in a publicly available Fast Neutron mutant collection for gene identification in pea

doi: 10.1186/s12870-026-08508-8

Figure Lengend Snippet: Candidate deletions identified by Axiom marker analysis. A JI2822 pseudomolecules are indicated as lines and the positions of several known genes are indicated for reference. The positions of deletions in four FN lines are indicated as coloured dots offset to the right of each pseudomolecule and the approximate size of the deletion in Mb is indicated (see Supplementary Table 3 for more detail). Known positions for genes Apu and VicC are shown. B The fraction of alleles scored as a SNP, rather than “---”, for deletions at Apu and VicC is shown. The frequency is plotted for successive groups of 11 markers, beginning and ending 100 markers from the deletion end points. A scale of 1Mb is indicated. The dip below 9 out of 11 indicates the position of the deletion

Article Snippet: A previously developed Axiom array of 84,690 SNP marker features [ ] was used to genotype the wild-type progenitor line, JI2822, and seven FN mutant lines (performed by Neogen Europe, Ayr, Scotland).

Techniques: Marker

Journal: Genes

Article Title: Genetic Diversity and Collection Structure Studies of Sesame ( Sesamum indicum L.) Accessions Across Ethiopian Research Centers

doi: 10.3390/genes17030300

Figure Lengend Snippet: SNP marker summary. ( A ) Distribution of SNP markers within 1 Mb windows across sixteen linkage groups, ( B ) number and density of SNP markers in each linkage group, and ( C ) SNP mutation types identified among 5163 SNP markers used in analysis of sesame accessions.

Article Snippet: Additionally, to ascertain chromosome positions, both SilicoDArT and SNP markers were aligned to the reference genomes of Chrom_Sesame.

Techniques: Marker, Mutagenesis

Journal: Genes

Article Title: Genetic Diversity and Collection Structure Studies of Sesame ( Sesamum indicum L.) Accessions Across Ethiopian Research Centers

doi: 10.3390/genes17030300

Figure Lengend Snippet: The cluster analysis using DArTseq-SNP markers for genetic relationship visualization among 188 sesame accessions. ( A ) Neighbor-Joining (NJ); ( B ) networking using accessions; and ( C ) networking using accessions sourced from institutes. The color indicate the source of centers.

Article Snippet: Additionally, to ascertain chromosome positions, both SilicoDArT and SNP markers were aligned to the reference genomes of Chrom_Sesame.

Techniques: